Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8197

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16565 and 16566 are separated by 226 nucleotides mRNA_8197: 16565 - KOG2922 Uncharacterized conserved protein, at 652,238 to 654,491 16565 mRNA_8198: 16566 - K03190 ureD, ureH urease accessory protein, at 654,718 to 655,775 16566

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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651,355 - +0.8
651,363 - -0.0
651,367 + +0.6
651,378 - +0.5
651,390 + -0.6
651,517 + -0.5
651,532 - -0.1
651,930 - -1.9
651,945 + -0.7
651,950 + -1.1
652,078 - -0.7
652,378 - +0.5
652,381 + +1.0
652,389 - +0.8
652,398 + +0.5
652,507 - 16565 mRNA_8197 0.12 -0.4
652,673 - 16565 mRNA_8197 0.19 +0.2
652,676 + 16565 mRNA_8197 0.19 +1.4
652,680 - 16565 mRNA_8197 0.20 +0.2
653,099 + 16565 mRNA_8197 0.38 +0.6
653,158 + 16565 mRNA_8197 0.41 +1.0
653,870 + 16565 mRNA_8197 0.72 +0.3
654,270 - -1.4
654,283 - +0.1
654,573 - -0.2
654,578 + -0.2
654,578 + -0.5
654,726 + -0.6
654,737 - -2.6
654,743 - -0.8
654,745 + -3.0
655,018 + 16566 mRNA_8198 0.28 -1.1
655,024 - 16566 mRNA_8198 0.29 -1.1
655,181 - 16566 mRNA_8198 0.44 +0.9

Or see this region's nucleotide sequence