Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8206

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16573 and 16574 are separated by 491 nucleotides16574 and 16575 are separated by 141 nucleotides mRNA_8205: 16573 - K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1, at 667,088 to 668,435 16573 mRNA_8206: 16574 - Hypothetical Protein, at 668,927 to 671,971 16574 mRNA_8207: 16575 - K09578 PIN1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, at 672,113 to 672,814 16575

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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668,207 + 16573 mRNA_8205 0.83 -2.1
668,511 + -1.6
668,655 + +2.5
668,663 + +1.1
668,672 - +0.6
668,673 - -0.6
668,678 - -0.2
668,684 - -0.1
668,805 - -0.1
669,249 + 16574 mRNA_8206 0.11 -0.3
669,258 - 16574 mRNA_8206 0.11 -1.1
669,806 - 16574 mRNA_8206 0.29 -0.2
670,325 - 16574 mRNA_8206 0.46 +0.9
670,340 + 16574 mRNA_8206 0.46 +0.4
670,884 - 16574 mRNA_8206 0.64 -1.2
671,177 + 16574 mRNA_8206 0.74 +1.0
671,347 - 16574 mRNA_8206 0.79 -0.9
671,608 - 16574 mRNA_8206 0.88 -0.2
671,919 + +2.8
672,042 + +0.5
672,056 - -1.1
672,202 - 16575 mRNA_8207 0.13 -2.4
672,216 + 16575 mRNA_8207 0.15 -0.4
672,322 + 16575 mRNA_8207 0.30 +0.4
672,341 - 16575 mRNA_8207 0.32 +0.4
672,374 + 16575 mRNA_8207 0.37 +0.6
672,682 + 16575 mRNA_8207 0.81 -0.6

Or see this region's nucleotide sequence