Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8299

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16666 and 16667 are separated by 627 nucleotides16667 and 16668 are separated by 52 nucleotides mRNA_8298: 16666 - K02858 ribB, RIB3 3,4-dihydroxy 2-butanone 4-phosphate synthase, at 877,941 to 878,924 16666 mRNA_8299: 16667 - Hypothetical Protein, at 879,552 to 881,168 16667 mRNA_8300: 16668 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13640,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SMART-Prolyl 4-hydroxylase alpha subunit homologues.-SM00702, at 881,221 to 882,082 16668

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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878,964 + -1.2
878,971 - -0.3
878,990 + -2.0
878,994 + -1.1
878,998 - +0.1
878,999 + +0.1
879,000 - -0.8
879,012 + +0.2
879,018 + +0.2
879,125 - -2.1
879,135 + +0.1
879,157 + -0.5
879,172 + +1.7
879,214 - +0.3
879,215 + +1.9
879,215 + +0.4
879,233 + -1.2
879,237 + -0.8
879,237 + +0.2
879,246 + +0.3
879,249 - +0.1
879,250 + -1.0
879,252 + -0.1
879,256 + -0.4
879,300 - -0.1
879,302 - +0.7
879,324 - -0.6
879,324 - +1.2
879,352 + -0.7
879,408 - -0.1
879,408 + +0.2
879,409 - +0.2
879,410 + +0.5
879,426 - -0.3
879,427 + +0.2
879,434 - +0.1
879,436 - +1.0
879,452 - +1.1
879,456 + -1.8
879,457 + -0.3
879,495 + +2.7
879,639 + -1.1
879,774 - 16667 mRNA_8299 0.14 +1.0
879,808 + 16667 mRNA_8299 0.16 +0.0
880,050 - 16667 mRNA_8299 0.31 -1.7
880,187 - 16667 mRNA_8299 0.39 +0.5
880,191 - 16667 mRNA_8299 0.40 -1.8
880,329 + 16667 mRNA_8299 0.48 -1.3
880,497 + 16667 mRNA_8299 0.58 +0.9
880,642 - 16667 mRNA_8299 0.67 +2.3
880,825 + 16667 mRNA_8299 0.79 -0.2
881,068 - +0.8
881,076 - +0.0
881,116 - -0.0
881,209 + -0.5
881,220 + -0.8
881,254 + -0.2
881,353 + 16668 mRNA_8300 0.15 +0.1
881,357 + 16668 mRNA_8300 0.16 +0.8
881,498 + 16668 mRNA_8300 0.32 -0.6
881,520 - 16668 mRNA_8300 0.35 +0.1
881,645 - 16668 mRNA_8300 0.49 +0.8
881,654 + 16668 mRNA_8300 0.50 -2.3
881,656 - 16668 mRNA_8300 0.50 -1.7
881,668 + 16668 mRNA_8300 0.52 +0.3
881,692 - 16668 mRNA_8300 0.55 -0.1
881,958 - 16668 mRNA_8300 0.85 +0.1
882,108 - -0.4
882,136 - -0.4

Or see this region's nucleotide sequence