Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8310

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16677 and 16678 are separated by 426 nucleotides16678 and 16679 are separated by 356 nucleotides mRNA_8309: 16677 - K06965 PELO, DOM34, pelA protein pelota, at 900,721 to 902,755 16677 mRNA_8310: 16678 - K18752 TNPO1, IPO2, KPNB2 transportin-1, at 903,182 to 906,312 16678 mRNA_8311: 16679 - K03016 RPB8, POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3, at 906,669 to 907,618 16679

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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902,826 - +1.1
902,959 - +0.2
902,961 + +0.0
902,965 + +0.8
902,967 + -2.9
902,984 + -2.0
906,552 + +0.5
906,708 - -0.7
906,726 + -0.1

Or see this region's nucleotide sequence