Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8385

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16752 and 16753 are separated by 153 nucleotides mRNA_8384: 16752 - KOG4401 Uncharacterized conserved protein, at 1,084,970 to 1,085,744 16752 mRNA_8385: 16753 - HMMPfam-Protein of unknown function, DUF608-PF04685,HMMPfam-Bacterial alpha-L-rhamnosidase-PF05592,SUPERFAMILY--SSF48208, at 1,085,898 to 1,088,411 16753

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,084,910 - -0.5
1,084,913 + +0.0
1,085,191 - 16752 mRNA_8384 0.29 +0.7
1,085,199 - 16752 mRNA_8384 0.30 +1.1
1,085,301 + 16752 mRNA_8384 0.43 +0.4
1,085,342 - 16752 mRNA_8384 0.48 +0.5
1,085,350 + 16752 mRNA_8384 0.49 -1.3
1,085,351 + 16752 mRNA_8384 0.49 -0.2
1,085,532 - 16752 mRNA_8384 0.73 +0.2
1,085,542 + 16752 mRNA_8384 0.74 +0.3
1,085,656 - 16752 mRNA_8384 0.89 +0.0
1,085,775 - -1.3
1,085,915 + -1.7
1,086,221 - 16753 mRNA_8385 0.13 -0.3
1,086,221 - 16753 mRNA_8385 0.13 -1.1
1,086,392 + 16753 mRNA_8385 0.20 -0.4
1,086,827 - 16753 mRNA_8385 0.37 +1.4
1,086,869 - 16753 mRNA_8385 0.39 -0.5
1,087,363 - 16753 mRNA_8385 0.58 -1.3
1,087,431 + 16753 mRNA_8385 0.61 +0.3
1,087,826 - 16753 mRNA_8385 0.77 -0.0
1,087,986 - 16753 mRNA_8385 0.83 +0.1
1,088,003 - 16753 mRNA_8385 0.84 +2.3
1,088,120 - 16753 mRNA_8385 0.88 -0.4
1,088,270 + +0.4
1,088,293 + +0.3
1,088,438 - +0.2
1,088,459 - -2.4
1,088,472 + +0.2
1,088,580 + -0.7
1,088,844 + -0.7

Or see this region's nucleotide sequence