Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8436

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_8436: 16804 - K19487 SFP1 transcription factor SFP1, at 1,222,894 to 1,225,231 16804

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,221,977 + -1.6
1,222,073 + +0.8
1,222,080 + +0.1
1,222,092 + -0.7
1,222,108 + -0.5
1,222,143 - +0.6
1,222,219 - +0.0
1,222,241 - -2.8
1,222,248 + -1.3
1,222,264 + -0.5
1,222,367 - -0.4
1,222,389 - -0.2
1,222,524 + +0.3
1,222,524 + +0.9
1,222,534 - +0.1
1,222,536 + -0.8
1,222,659 - +1.4
1,222,666 - +1.2
1,222,678 + -1.6
1,222,684 + +0.9
1,222,686 + +0.4
1,222,835 - +0.5
1,222,853 - +1.1
1,225,074 + -0.5
1,225,219 - -0.7
1,225,334 - -1.9
1,225,376 + -0.5
1,225,514 - +0.2
1,225,632 - +0.6
1,225,633 - +0.3
1,225,634 - +2.9
1,225,635 - -0.5
1,225,645 - +0.4
1,225,648 - -0.3
1,225,648 + +0.3
1,225,665 + +0.2
1,225,667 - +0.3
1,225,671 - +0.5
1,225,671 - -0.1
1,225,672 - -0.8
1,225,672 + -2.1
1,225,672 + +0.1
1,225,674 - +1.3
1,225,674 + -0.9
1,225,698 - +0.1
1,225,701 + -0.2
1,225,887 - +0.3

Or see this region's nucleotide sequence