Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8447

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16814 and 16815 are separated by 550 nucleotides mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1,250,105 to 1,254,255 16814 mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1,254,806 to 1,256,692 16815

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,253,844 - -0.6
1,253,844 + -0.5
1,253,963 + +0.4
1,254,217 - +3.2
1,254,290 + -1.5
1,254,406 - +0.4
1,254,413 + -0.2
1,254,435 + -0.5
1,254,439 - +0.3
1,254,445 + +0.4
1,254,451 + +1.0
1,254,496 + +0.5
1,254,503 - +0.1
1,254,539 - -0.3
1,254,540 - +0.7
1,254,604 - +0.1
1,254,606 - +0.2
1,254,611 - -0.3
1,254,626 - +0.1
1,254,627 - -0.2
1,254,632 - -1.9
1,254,745 + +0.1
1,254,761 + +0.8
1,254,764 + -0.0
1,254,778 + -0.5
1,256,793 + +0.4
1,256,795 + -1.4
1,256,799 - +0.7
1,256,800 + +2.3
1,256,800 - +1.3
1,256,815 + +0.4
1,256,820 + -0.0
1,256,822 + +0.6
1,256,961 - -0.0
1,256,961 - +0.4
1,256,986 + -0.1
1,257,103 + +0.1
1,257,108 + -0.9
1,257,144 + -0.4
1,257,152 - +1.2
1,257,299 - +1.0
1,257,394 - -1.2
1,257,401 - +0.4
1,257,404 - -0.5
1,257,407 - -0.8
1,257,415 + +0.4
1,257,427 + -1.0
1,257,455 - -0.7
1,257,478 - -0.6
1,257,498 - +1.3
1,257,508 + +0.2
1,257,508 - -1.1
1,257,516 - -0.6
1,257,534 - +0.6
1,257,535 + +0.7
1,257,540 + +0.3
1,257,546 + +1.5
1,257,563 - -0.0
1,257,578 - -1.4
1,257,630 + +0.2
1,257,649 + -0.5

Or see this region's nucleotide sequence