Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_28

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8395 and 8396 are separated by 452 nucleotides8396 and 8397 are separated by 166 nucleotides mRNA_27: 8395 - K00088 IMPDH, guaB IMP dehydrogenase, at 70,303 to 72,461 8395 mRNA_28: 8396 - Hypothetical Protein, at 72,914 to 73,928 8396 mRNA_29: 8397 - HMMPfam-Swi5-PF07061, at 74,095 to 74,821 8397

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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72,795 - +1.0
72,811 - +0.3
72,924 - +0.6
73,108 - 8396 mRNA_28 0.19 -0.3
73,204 + 8396 mRNA_28 0.29 -0.2
73,217 + 8396 mRNA_28 0.30 -0.6
73,300 + 8396 mRNA_28 0.38 +0.0
73,401 - 8396 mRNA_28 0.48 +0.6
73,569 - 8396 mRNA_28 0.65 +0.5
73,849 + +0.7
73,998 - -0.2
74,006 - +0.9
74,251 - 8397 mRNA_29 0.21 +0.6
74,281 + 8397 mRNA_29 0.26 +0.7
74,285 - 8397 mRNA_29 0.26 +0.6
74,296 + 8397 mRNA_29 0.28 -0.9
74,309 + 8397 mRNA_29 0.29 +0.2
74,320 - 8397 mRNA_29 0.31 +0.5
74,326 + 8397 mRNA_29 0.32 +0.5
74,586 + 8397 mRNA_29 0.68 -0.3
74,735 - 8397 mRNA_29 0.88 -1.6
74,756 + -0.2

Or see this region's nucleotide sequence