Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_173

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8540 and 8541 are separated by 381 nucleotides8541 and 8542 are separated by 456 nucleotides mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421,100 to 422,861 8540 mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423,243 to 425,969 8541 mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426,426 to 428,792 8542

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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422,372 - 8540 mRNA_172 0.72 -1.0
422,392 + 8540 mRNA_172 0.73 +0.1
422,666 - 8540 mRNA_172 0.89 -1.7
422,678 + 8540 mRNA_172 0.90 -1.6
422,822 + -2.5
423,118 - -1.3
423,758 - 8541 mRNA_173 0.19 +0.2
424,152 - 8541 mRNA_173 0.33 +1.3
424,292 + 8541 mRNA_173 0.38 -0.4
424,435 - 8541 mRNA_173 0.44 +1.4
424,442 - 8541 mRNA_173 0.44 +0.8
424,872 - 8541 mRNA_173 0.60 +1.0
425,170 - 8541 mRNA_173 0.71 -1.3
425,700 - -0.7
425,883 + +0.2
425,986 - +0.1
426,012 + +0.4
426,034 - -0.0
426,141 + -0.7
426,165 - -0.5
426,589 - +0.2
426,947 + 8542 mRNA_174 0.22 -0.8

Or see this region's nucleotide sequence