Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_186

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8553 and 8554 are separated by 387 nucleotides8554 and 8555 are separated by 536 nucleotides mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449,151 to 451,288 8553 mRNA_186: 8554 - Hypothetical Protein, at 451,676 to 453,998 8554 mRNA_187: 8555 - Hypothetical Protein, at 454,535 to 455,556 8555

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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451,058 - 8553 mRNA_185 0.89 -0.1
451,324 - +0.3
451,326 + +0.7
451,338 + -0.4
451,784 - -0.6
452,527 - 8554 mRNA_186 0.37 -1.3
452,650 - 8554 mRNA_186 0.42 -0.6
452,785 - 8554 mRNA_186 0.48 -0.1
452,813 + 8554 mRNA_186 0.49 -0.6
452,818 - 8554 mRNA_186 0.49 -1.4
452,966 + 8554 mRNA_186 0.56 +0.3
453,098 + 8554 mRNA_186 0.61 +0.9
453,101 - 8554 mRNA_186 0.61 +1.4
453,374 + 8554 mRNA_186 0.73 -0.2
454,108 - -1.0
454,269 - -1.5
454,398 - +0.7
454,414 - +0.8
454,422 - -1.4
454,864 + 8555 mRNA_187 0.32 +1.1
454,898 - 8555 mRNA_187 0.36 +0.8

Or see this region's nucleotide sequence