Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_196

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8563 and 8564 are separated by 160 nucleotides8564 and 8565 are separated by 250 nucleotides mRNA_195: 8563 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 475,882 to 478,455 8563 mRNA_196: 8564 - K11230 SSK2 mitogen-activated protein kinase kinase kinase, at 478,616 to 483,273 8564 mRNA_197: 8565 - K14765 NGDN, LCP5 U3 small nucleolar ribonucleoprotein protein LCP5, at 483,524 to 484,817 8565

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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478,518 + -1.4
478,529 + -1.3
478,854 + +1.3
480,790 - 8564 mRNA_196 0.47 -1.6
483,283 + -0.8
483,341 - -0.0
483,428 - +0.0

Or see this region's nucleotide sequence