Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_279

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8646 and 8647 are separated by 218 nucleotides8647 and 8648 are separated by 434 nucleotides mRNA_278: 8646 - K03134 TAF10 transcription initiation factor TFIID subunit 10, at 664,753 to 665,683 8646 mRNA_279: 8647 - K02908 RP-L30e, RPL30 large subunit ribosomal protein L30e, at 665,902 to 666,990 8647 mRNA_280: 8648 - Hypothetical Protein, at 667,425 to 668,296 8648

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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665,702 - -0.7
665,828 + -1.0
665,830 - -1.6
665,831 + -1.9
665,847 - +1.4
665,853 + -0.8
665,970 - -0.1
665,975 + +0.9
665,991 + -0.3
666,002 - +0.5
666,004 - -2.0
667,562 - 8648 mRNA_280 0.16 -0.1
667,620 - 8648 mRNA_280 0.22 +0.4
667,808 - 8648 mRNA_280 0.44 +0.2
667,845 + 8648 mRNA_280 0.48 +0.9
667,915 + 8648 mRNA_280 0.56 +0.6
667,946 - 8648 mRNA_280 0.60 -1.6
667,959 - 8648 mRNA_280 0.61 +1.2

Or see this region's nucleotide sequence