Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_283

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8650 and 8651 are separated by 698 nucleotides8651 and 8652 are separated by 768 nucleotides mRNA_282: 8650 - Hypothetical Protein, at 672,440 to 673,215 8650 mRNA_283: 8651 - K00872 thrB1 homoserine kinase, at 673,914 to 675,244 8651 mRNA_284: 8652 - K01762 ACS 1-aminocyclopropane-1-carboxylate synthase, at 676,013 to 677,803 8652

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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672,952 - 8650 mRNA_282 0.66 +0.6
673,010 + 8650 mRNA_282 0.73 -1.7
673,014 + 8650 mRNA_282 0.74 +0.0
673,059 - 8650 mRNA_282 0.80 -0.1
673,165 + +0.1
673,215 + -0.2
673,523 + -0.3
673,882 + +0.3
675,317 - -0.0
675,638 + -0.2
675,764 - +0.6
675,766 - -0.1
675,792 - -2.0
675,808 + +0.4
675,815 + -0.8
675,936 + -1.6
676,081 + -0.1

Or see this region's nucleotide sequence