Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_287

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8654 and 8655 are separated by 253 nucleotides8655 and 8656 are separated by 194 nucleotides mRNA_286: 8654 - SUPERFAMILY--SSF52047, at 679,511 to 681,745 8654 mRNA_287: 8655 - KOG1861 Leucine permease transcriptional regulator, at 681,999 to 683,854 8655 mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684,049 to 686,611 8656

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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681,633 - -0.4
681,653 + +0.8
681,792 + +0.0
681,796 + +0.6
681,814 - +0.5
681,814 - -0.8
681,828 + -0.5
682,959 + 8655 mRNA_287 0.52 +0.2
683,815 - +0.4
683,823 - +1.4
684,270 - -0.1
684,395 - 8656 mRNA_288 0.13 -0.1
684,551 - 8656 mRNA_288 0.20 -0.3
684,705 - 8656 mRNA_288 0.26 -0.3

Or see this region's nucleotide sequence