Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_323

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8690 and 8691 are separated by 518 nucleotides8691 and 8692 are separated by 647 nucleotides mRNA_322: 8690 - Hypothetical Protein, at 764,792 to 765,740 8690 mRNA_323: 8691 - Hypothetical Protein, at 766,259 to 767,210 8691 mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767,858 to 770,027 8692

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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765,286 - 8690 mRNA_322 0.52 +0.1
765,740 + +1.1
766,372 + 8691 mRNA_323 0.12 +0.5
766,499 + 8691 mRNA_323 0.25 +0.5
766,950 - 8691 mRNA_323 0.73 -0.4
767,067 - 8691 mRNA_323 0.85 -1.3
767,149 - +0.6
767,181 + -2.2
767,238 - +0.4
767,288 - +0.2
767,324 + +0.6
767,333 + -0.2
767,337 + +0.5
767,361 - +1.0
767,411 + +0.2
767,506 - -1.2
767,511 + +0.5
767,530 - -0.2
767,530 - +0.7
767,537 + +1.8
767,538 + -0.6
767,557 + +0.3
767,564 - -0.8
767,577 + +1.0
767,585 + +0.1
767,594 + -0.6
767,603 + +0.5
767,653 - -2.2
767,658 - -0.8
767,664 - +0.4
767,664 - -0.1
767,680 + -1.0
767,685 + -0.3
767,784 + -0.9
767,821 - -0.8
767,823 + +0.2
767,839 + -0.1
767,865 + -1.0
767,964 - +0.3
768,124 + 8692 mRNA_324 0.12 -0.4
768,128 + 8692 mRNA_324 0.12 -2.1

Or see this region's nucleotide sequence