Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_414

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8781 and 8782 are separated by 369 nucleotides8782 and 8783 are separated by 373 nucleotides mRNA_413: 8781 - K00227 SC5DL, ERG3 Delta7-sterol 5-desaturase, at 965,870 to 967,292 8781 mRNA_414: 8782 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 967,662 to 968,667 8782 mRNA_415: 8783 - K03511 POLK DNA polymerase kappa, at 969,041 to 971,775 8783

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
967,092 - 8781 mRNA_413 0.86 -1.2
967,425 + -2.5
967,575 + -0.3
967,697 - -0.3
967,699 + -0.5
967,733 + -2.9
967,880 - 8782 mRNA_414 0.22 +0.1
967,886 + 8782 mRNA_414 0.22 -0.5
967,886 + 8782 mRNA_414 0.22 +0.9
967,888 + 8782 mRNA_414 0.22 +0.4
968,435 - 8782 mRNA_414 0.77 +0.6
968,435 + 8782 mRNA_414 0.77 -0.4
968,437 - 8782 mRNA_414 0.77 +1.3
968,447 - 8782 mRNA_414 0.78 +0.7
968,448 - 8782 mRNA_414 0.78 +0.0
968,455 + 8782 mRNA_414 0.79 +0.6
968,459 + 8782 mRNA_414 0.79 -1.2
968,606 + -0.7
968,643 - +0.4
968,740 - +1.3
968,741 - -2.2
968,749 - +0.0
968,763 + +0.7
968,768 - +1.4
968,769 + +0.1
968,777 + -1.5
968,782 + -1.7
968,790 - -2.8
968,796 - +0.8
968,797 - -0.3
968,797 - +0.8
968,803 + -0.6
968,812 - +1.4
968,813 + +0.0
968,813 + -1.1
968,849 + -1.5
968,863 + +0.9
968,869 + -0.4
968,949 - +0.1
969,325 + 8783 mRNA_415 0.10 -0.5
969,524 - 8783 mRNA_415 0.18 +0.5
969,536 + 8783 mRNA_415 0.18 +0.7

Or see this region's nucleotide sequence