Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_423

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8790 and 8791 are separated by 199 nucleotides8791 and 8792 are separated by 557 nucleotides mRNA_422: 8790 - KOG0911 Glutaredoxin-related protein, at 984,573 to 985,710 8790 mRNA_423: 8791 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 985,910 to 986,810 8791 mRNA_424: 8792 - HMMPfam-Diaphanous GTPase-binding Domain-PF06371,SUPERFAMILY--SSF48371, at 987,368 to 990,699 8792

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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985,680 + +0.1
985,804 + -0.1
986,081 + 8791 mRNA_423 0.19 -0.9
986,551 - 8791 mRNA_423 0.71 -2.0
986,663 - 8791 mRNA_423 0.84 +0.4
986,698 - 8791 mRNA_423 0.87 +3.5
986,935 - -0.8
986,945 - +1.0
986,956 + -1.0
986,964 + -2.0
986,989 - +0.4
987,122 - +0.0
987,132 - +0.3
987,154 + -1.0
987,189 - +1.6
987,290 + +0.9
987,306 - -0.3
987,335 + -0.5
987,381 - -1.2
987,442 + -0.5
987,563 - -1.0
987,717 - 8792 mRNA_424 0.10 -0.7
987,728 - 8792 mRNA_424 0.11 +0.2
987,749 - 8792 mRNA_424 0.11 -2.0

Or see this region's nucleotide sequence