Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_461

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8828 and 8829 are separated by 167 nucleotides8829 and 8830 are separated by 505 nucleotides mRNA_460: 8828 - K15177 LEO1 RNA polymerase-associated protein LEO1, at 1,071,299 to 1,073,173 8828 mRNA_461: 8829 - Hypothetical Protein, at 1,073,341 to 1,074,099 8829 mRNA_462: 8830 - Hypothetical Protein, at 1,074,605 to 1,075,532 8830

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,072,860 + 8828 mRNA_460 0.83 -1.1
1,072,975 + 8828 mRNA_460 0.89 +0.0
1,073,572 - 8829 mRNA_461 0.30 +0.1
1,073,702 + 8829 mRNA_461 0.48 -0.0
1,073,881 - 8829 mRNA_461 0.71 +1.7
1,074,131 + +0.1
1,074,134 - +0.0
1,074,145 - -2.2
1,074,146 + +0.0
1,074,181 + +0.9
1,074,182 - +0.1
1,074,244 - +0.3
1,074,310 - -1.3
1,074,313 + -0.2
1,074,313 - -1.0
1,074,321 - -1.6
1,074,324 + -0.8
1,074,345 - +0.2
1,074,348 - +2.2
1,074,650 + +0.1
1,074,792 + 8830 mRNA_462 0.20 -0.2

Or see this region's nucleotide sequence