Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_475

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8842 and 8843 are separated by 366 nucleotides8843 and 8844 are separated by 519 nucleotides mRNA_474: 8842 - Hypothetical Protein, at 1,101,905 to 1,103,305 8842 mRNA_475: 8843 - K15153 MED31, SOH1 mediator of RNA polymerase II transcription subunit 31, at 1,103,672 to 1,105,927 8843 mRNA_476: 8844 - K02951 RP-S12e, RPS12 small subunit ribosomal protein S12e, at 1,106,447 to 1,107,237 8844

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,103,155 - 8842 mRNA_474 0.89 -0.0
1,103,175 + +0.8
1,103,872 - -0.1
1,104,023 + 8843 mRNA_475 0.16 +0.1
1,104,192 + 8843 mRNA_475 0.23 +0.2
1,104,589 - 8843 mRNA_475 0.41 -1.5
1,104,597 - 8843 mRNA_475 0.41 -0.7
1,104,613 + 8843 mRNA_475 0.42 -1.1
1,104,625 - 8843 mRNA_475 0.42 +0.0
1,104,647 + 8843 mRNA_475 0.43 -0.6
1,104,759 - 8843 mRNA_475 0.48 -1.1
1,104,878 + 8843 mRNA_475 0.53 -1.3
1,104,886 - 8843 mRNA_475 0.54 +0.3
1,104,891 + 8843 mRNA_475 0.54 -0.8
1,104,896 - 8843 mRNA_475 0.54 +0.6
1,104,898 + 8843 mRNA_475 0.54 -0.2
1,104,913 - 8843 mRNA_475 0.55 -0.9
1,104,913 - 8843 mRNA_475 0.55 +0.5
1,105,029 + 8843 mRNA_475 0.60 +0.0
1,105,034 - 8843 mRNA_475 0.60 -0.7
1,105,074 + 8843 mRNA_475 0.62 -1.6
1,105,084 - 8843 mRNA_475 0.63 +0.0
1,105,092 - 8843 mRNA_475 0.63 -0.6
1,105,099 - 8843 mRNA_475 0.63 -0.4
1,105,101 + 8843 mRNA_475 0.63 +0.7
1,105,108 + 8843 mRNA_475 0.64 -0.2
1,105,112 + 8843 mRNA_475 0.64 -0.0
1,105,113 - 8843 mRNA_475 0.64 +0.1
1,105,113 + 8843 mRNA_475 0.64 -0.3
1,105,119 + 8843 mRNA_475 0.64 -1.2
1,105,119 + 8843 mRNA_475 0.64 +0.6
1,105,355 + 8843 mRNA_475 0.75 +0.1
1,105,447 + 8843 mRNA_475 0.79 -1.4
1,105,572 + 8843 mRNA_475 0.84 +1.6
1,105,616 + 8843 mRNA_475 0.86 +0.1
1,105,945 - -2.1
1,106,026 - +0.5
1,106,071 - -2.8

Or see this region's nucleotide sequence