Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_486

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8853 and 8854 are separated by 190 nucleotides8854 and 8855 are separated by 283 nucleotides mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1,154,487 to 1,156,857 8853 mRNA_486: 8854 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 1,157,048 to 1,157,778 8854 mRNA_487: 8855 - HMMPfam-Thioredoxin-PF00085,HMMPfam-PITH domain-PF06201,PRINTS-Thioredoxin family signature-PR00421,ProSitePatterns-Thioredoxin family active site.-PS00194,ProSiteProfiles-Thioredoxin domain profile.-PS51352,ProSiteProfiles-PITH domain profile.-PS51532,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF52833, at 1,158,062 to 1,159,223 8855

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,156,295 + 8853 mRNA_485 0.76 -1.4
1,156,479 - 8853 mRNA_485 0.84 +0.4
1,156,601 - 8853 mRNA_485 0.89 +2.0
1,156,904 - -0.7
1,156,930 - +3.1
1,156,965 + -0.9
1,157,108 - -4.8
1,157,250 - 8854 mRNA_486 0.28 -0.3
1,157,415 - 8854 mRNA_486 0.50 -1.7
1,157,538 - 8854 mRNA_486 0.67 -1.6
1,157,822 + -1.7
1,157,834 + +0.8
1,158,124 + +1.0

Or see this region's nucleotide sequence