Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_509

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8876 and 8877 are separated by 196 nucleotides8877 and 8878 are separated by 927 nucleotides mRNA_508: 8876 - K16466 CETN3, CDC31 centrin-3, at 1,210,355 to 1,211,163 8876 mRNA_509: 8877 - K11566 ASK1 DASH complex subunit ASK1, at 1,211,360 to 1,213,561 8877 mRNA_510: 8878 - K01922 PPCS, coaB phosphopantothenate-cysteine ligase, at 1,214,489 to 1,216,016 8878

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,211,223 - +0.1
1,211,226 - -1.4
1,211,230 - +0.5
1,211,286 + +0.5
1,211,353 - -0.3
1,211,408 + -2.0
1,211,549 - -1.6
1,212,296 + 8877 mRNA_509 0.43 -0.9
1,212,665 + 8877 mRNA_509 0.59 +0.3
1,213,838 - -0.8
1,213,838 - +0.3
1,213,891 + +1.4
1,214,146 - -0.7

Or see this region's nucleotide sequence