Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_557

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8924 and 8925 are separated by 728 nucleotides8925 and 8926 are separated by 834 nucleotides mRNA_556: 8924 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 1,322,822 to 1,323,921 8924 mRNA_557: 8925 - HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236, at 1,324,650 to 1,329,010 8925 mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1,329,845 to 1,332,752 8926

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,323,747 + 8924 mRNA_556 0.84 +0.5
1,323,754 + 8924 mRNA_556 0.85 +0.6
1,323,894 + +0.5
1,324,074 + +0.0
1,324,359 + -0.4
1,324,364 + -0.2
1,324,375 + +1.7
1,324,386 - -0.2
1,324,394 + -2.4
1,324,479 - -0.1
1,324,556 + +1.0
1,324,670 + +0.3
1,324,935 + +1.5
1,325,091 - 8925 mRNA_557 0.10 -0.3
1,325,894 - 8925 mRNA_557 0.29 +0.9
1,326,013 - 8925 mRNA_557 0.31 -2.8
1,326,187 - 8925 mRNA_557 0.35 +0.7
1,326,577 + 8925 mRNA_557 0.44 -2.2
1,326,618 + 8925 mRNA_557 0.45 +0.3
1,326,848 + 8925 mRNA_557 0.50 -0.0
1,327,158 - 8925 mRNA_557 0.58 -0.8

Or see this region's nucleotide sequence