Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_573

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8940 and 8941 are separated by 197 nucleotides8941 and 8942 are separated by 462 nucleotides mRNA_572: 8940 - Hypothetical Protein, at 1,367,917 to 1,369,757 8940 mRNA_573: 8941 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 1,369,955 to 1,372,100 8941 mRNA_574: 8942 - K02999 RPA1, POLR1A DNA-directed RNA polymerase I subunit RPA1, at 1,372,563 to 1,378,346 8942

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,369,402 + 8940 mRNA_572 0.81 +0.0
1,369,860 - -0.4
1,370,167 + +0.1
1,371,292 + 8941 mRNA_573 0.62 +1.2
1,371,618 + 8941 mRNA_573 0.77 +0.3
1,371,894 + -0.3
1,372,056 - -0.1
1,372,160 - +1.0
1,372,171 - -0.2
1,372,182 + -0.4
1,372,186 + -0.3
1,372,200 - -0.9
1,372,204 + -1.0
1,372,206 + +0.9
1,372,209 + +0.2
1,372,210 + +1.1
1,372,223 + -0.8
1,372,338 - +0.0
1,372,522 + -1.7

Or see this region's nucleotide sequence