Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_609

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8976 and 8977 are separated by 555 nucleotides8977 and 8978 are separated by 277 nucleotides mRNA_608: 8976 - K09490 HSPA5, BIP heat shock 70kDa protein 5, at 1,462,266 to 1,464,196 8976 mRNA_609: 8977 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 1,464,752 to 1,468,761 8977 mRNA_610: 8978 - K06961 KRR1 ribosomal RNA assembly protein, at 1,469,039 to 1,470,636 8978

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,464,660 + +0.1
1,464,661 - -0.3
1,464,675 - +0.5
1,464,688 - -1.0
1,464,713 + -0.6
1,464,723 + +0.1
1,464,833 - -0.3
1,464,840 + -0.3
1,464,856 + +1.1
1,464,985 + +0.6
1,464,988 + +2.3
1,465,289 + 8977 mRNA_609 0.13 -0.3
1,465,587 + 8977 mRNA_609 0.21 +0.5
1,465,733 - 8977 mRNA_609 0.24 +0.3
1,465,844 - 8977 mRNA_609 0.27 +0.1
1,465,972 + 8977 mRNA_609 0.30 +0.2
1,466,585 - 8977 mRNA_609 0.46 -1.5
1,466,599 + 8977 mRNA_609 0.46 -0.0
1,466,710 - 8977 mRNA_609 0.49 +0.5
1,466,728 + 8977 mRNA_609 0.49 +0.7
1,466,908 + 8977 mRNA_609 0.54 -0.9
1,467,458 - 8977 mRNA_609 0.67 +0.4
1,467,765 - 8977 mRNA_609 0.75 +0.4
1,467,900 + 8977 mRNA_609 0.79 -2.0
1,467,936 + 8977 mRNA_609 0.79 -0.9
1,468,044 - 8977 mRNA_609 0.82 +0.4
1,468,181 + 8977 mRNA_609 0.86 +0.6
1,468,356 - 8977 mRNA_609 0.90 +0.5
1,468,610 - -0.2
1,468,634 + +0.6
1,468,634 - +0.2
1,468,654 + -0.7
1,468,727 - +0.4
1,468,764 + +0.4
1,468,791 + +2.1
1,468,794 + +1.1
1,468,799 + +0.6
1,468,922 - +0.3
1,468,932 - -0.5
1,468,941 - -0.7
1,468,943 + -0.8
1,468,948 + -1.3
1,468,957 - +0.8

Or see this region's nucleotide sequence