Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_613

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8980 and 8981 are separated by 147 nucleotides8981 and 8982 are separated by 360 nucleotides mRNA_612: 8980 - KOG3183 Predicted Zn-finger protein, at 1,473,090 to 1,474,198 8980 mRNA_613: 8981 - K10631 TOPORS E3 ubiquitin-protein ligase Topors, at 1,474,346 to 1,477,518 8981 mRNA_614: 8982 - K06875 PDCD5, TFAR19 programmed cell death protein 5, at 1,477,879 to 1,478,544 8982

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,473,394 - 8980 mRNA_612 0.27 +0.2
1,473,396 + 8980 mRNA_612 0.28 +0.4
1,473,425 - 8980 mRNA_612 0.30 +0.6
1,473,892 - 8980 mRNA_612 0.72 +1.5
1,474,142 + +0.1
1,474,158 + +0.8
1,474,161 - -0.7
1,474,303 - +0.8
1,474,708 + 8981 mRNA_613 0.11 +1.5
1,475,041 - 8981 mRNA_613 0.22 -1.0
1,477,053 + 8981 mRNA_613 0.85 +1.2
1,477,300 + -1.2
1,477,635 - +2.6
1,477,747 - +0.8
1,477,748 + -0.8
1,477,761 + +1.0
1,477,920 + -0.4
1,478,475 + 8982 mRNA_614 0.89 +1.4
1,478,498 + -0.4

Or see this region's nucleotide sequence