Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_672

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9039 and 9040 are separated by 63 nucleotides9040 and 9041 are separated by 833 nucleotides mRNA_671: 9039 - K03846 ALG9 alpha-1,2-mannosyltransferase, at 1,618,473 to 1,620,853 9039 mRNA_672: 9040 - Hypothetical Protein, at 1,620,917 to 1,621,557 9040 mRNA_673: 9041 - BLAST chordin [Novocrania anomala], at 1,622,391 to 1,622,567 9041

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,620,439 - 9039 mRNA_671 0.83 +0.2
1,620,800 - -0.5
1,621,002 + 9040 mRNA_672 0.13 +0.6
1,621,018 - 9040 mRNA_672 0.16 -1.4
1,621,031 - 9040 mRNA_672 0.18 +0.2
1,621,162 - 9040 mRNA_672 0.38 -0.0
1,621,757 - -0.1
1,621,949 - -0.3
1,622,142 - -0.5
1,622,202 + +0.6
1,622,477 + 9041 mRNA_673 0.49 -0.4

Or see this region's nucleotide sequence