Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_738

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9105 and 9106 are separated by 580 nucleotides mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1,756,906 to 1,757,418 9105 mRNA_738: 9106 - K06606 iolI 2-keto-myo-inositol isomerase, at 1,757,999 to 1,760,705 9106

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,757,372 - +0.1
1,757,377 + +0.4
1,757,378 + +0.9
1,757,521 + +0.1
1,757,837 - -0.5
1,757,843 - +0.4
1,757,925 - +0.5
1,757,981 + -0.0
1,758,003 - -0.3
1,758,003 - +0.2
1,758,394 - 9106 mRNA_738 0.15 -0.4
1,758,458 + 9106 mRNA_738 0.17 -0.2
1,758,508 - 9106 mRNA_738 0.19 +0.2
1,758,556 - 9106 mRNA_738 0.21 -0.6
1,758,623 + 9106 mRNA_738 0.23 -0.5
1,759,179 - 9106 mRNA_738 0.44 -1.0
1,759,279 - 9106 mRNA_738 0.47 -1.3
1,759,485 + 9106 mRNA_738 0.55 +1.4
1,759,913 + 9106 mRNA_738 0.71 +1.5
1,760,012 - 9106 mRNA_738 0.74 +0.2
1,760,040 - 9106 mRNA_738 0.75 +0.3
1,760,174 - 9106 mRNA_738 0.80 -0.4
1,760,320 + 9106 mRNA_738 0.86 -2.0
1,760,455 + +0.2
1,760,521 - -0.1
1,760,528 + +1.7
1,760,755 + -0.1
1,761,045 - +0.4
1,761,062 + -0.6
1,761,065 + +0.2
1,761,164 - +0.7
1,761,181 + +1.4
1,761,212 + -0.4
1,761,222 - -0.3
1,761,370 + -0.6
1,761,406 - -1.0
1,761,528 + -0.3

Or see this region's nucleotide sequence