Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_789

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9156 and 9157 are separated by 380 nucleotides9157 and 9158 are separated by 573 nucleotides mRNA_788: 9156 - Hypothetical Protein, at 1,872,405 to 1,873,287 9156 mRNA_789: 9157 - K14459 HEX hexosaminidase, at 1,873,668 to 1,877,392 9157 mRNA_790: 9158 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 1,877,966 to 1,880,180 9158

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,873,240 - +0.5
1,873,366 - +0.3
1,873,426 - -0.1
1,873,521 + +0.4
1,873,534 + -0.5
1,873,537 + -1.7
1,873,537 + -0.2
1,873,539 + +0.6
1,873,553 - -0.2
1,873,554 + +0.1
1,873,612 - +0.4
1,873,635 - -1.0
1,873,635 - -0.5
1,873,636 + -0.7
1,873,638 + +0.8
1,873,641 - +0.0
1,873,648 - +0.2
1,873,795 + +0.1
1,873,809 + +1.0
1,873,918 + -0.4
1,874,057 - 9157 mRNA_789 0.10 -0.8
1,874,088 - 9157 mRNA_789 0.11 +0.9
1,874,220 + 9157 mRNA_789 0.15 -0.2
1,874,773 - 9157 mRNA_789 0.30 +0.1
1,874,953 - 9157 mRNA_789 0.34 +0.0
1,875,255 + 9157 mRNA_789 0.43 -0.6
1,875,412 + 9157 mRNA_789 0.47 +0.8
1,875,528 + 9157 mRNA_789 0.50 -0.1
1,875,683 - 9157 mRNA_789 0.54 +0.0
1,876,101 - 9157 mRNA_789 0.65 -1.5
1,876,670 + 9157 mRNA_789 0.81 -0.6
1,877,135 + +0.1
1,877,254 + +0.1
1,877,291 + +0.2
1,877,399 + +0.5
1,877,452 - +1.0
1,877,718 - +0.9
1,877,740 + -0.8
1,877,874 - -0.0
1,877,879 + -1.4
1,877,880 + +0.1
1,877,880 + -0.2
1,877,889 + +0.1

Or see this region's nucleotide sequence