Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_858

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9225 and 9226 are separated by 504 nucleotides9226 and 9227 are separated by 180 nucleotides mRNA_857: 9225 - K14565 NOP58 nucleolar protein 58, at 2,053,274 to 2,055,374 9225 mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2,055,879 to 2,057,799 9226 mRNA_859: 9227 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 2,057,980 to 2,061,220 9227

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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2,055,569 + -0.4
2,055,579 - -0.6
2,055,616 - -0.0
2,055,684 - -2.5
2,055,696 - +0.5
2,055,698 + -1.7
2,055,700 + +1.9
2,055,702 + +0.4
2,055,814 + -0.3
2,055,830 + -0.5
2,057,014 - 9226 mRNA_858 0.59 -2.1
2,057,729 + -2.5
2,057,825 - -0.1
2,057,879 - -1.6
2,057,898 - -1.0
2,057,902 + +0.5
2,057,905 - +0.9
2,057,912 - +0.1
2,058,032 + -2.1
2,058,043 - +1.4
2,058,048 - -0.2
2,058,064 + -1.6
2,058,105 - -0.4
2,058,507 - 9227 mRNA_859 0.16 -0.7

Or see this region's nucleotide sequence