Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_879

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9247 and 9248 are separated by 252 nucleotides mRNA_879: 9247 - K12412 MCM1 pheromone receptor transcription factor, at 2,099,747 to 2,101,589 9247 mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2,101,842 to 2,104,437 9248

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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2,098,747 + +0.6
2,098,754 + -0.8
2,098,759 - +1.0
2,098,759 - +0.3
2,098,759 - +0.2
2,098,759 + -0.8
2,098,761 - +1.9
2,098,762 + -0.1
2,098,762 + +0.7
2,098,763 - +1.0
2,098,766 + -0.2
2,098,769 - +0.6
2,098,769 - +1.0
2,098,776 - +0.4
2,098,778 - +0.4
2,098,782 - +0.6
2,098,784 + +1.4
2,098,793 + -0.4
2,098,801 - -1.5
2,098,802 + -1.5
2,098,803 - +0.0
2,098,805 - +1.7
2,098,809 - -0.9
2,098,811 + -2.3
2,098,813 + -0.8
2,098,818 - -0.6
2,098,819 + +0.7
2,098,822 - +0.3
2,098,822 - -0.3
2,098,824 + +0.6
2,098,824 - +0.3
2,098,824 - +0.6
2,098,828 - +0.6
2,098,830 + +0.0
2,098,831 - +0.2
2,098,831 - +0.3
2,098,832 + +0.1
2,098,833 - -0.0
2,098,854 - +1.7
2,098,859 + +0.3
2,098,862 + +0.4
2,098,899 - -1.1
2,098,900 - +0.4
2,098,903 + +2.5
2,098,904 - +0.9
2,098,908 + +0.9
2,099,023 - +0.5
2,099,028 - +0.1
2,099,030 + -3.8
2,099,035 + +0.3
2,099,041 - -0.8
2,099,042 + -0.7
2,099,042 + -0.7
2,099,042 - -0.3
2,099,045 - +0.6
2,099,048 - +0.1
2,099,049 + +0.6
2,099,055 + -1.3
2,099,059 + -0.4
2,099,064 - +0.9
2,099,064 - -1.2
2,099,067 + -0.0
2,099,070 - +0.3
2,099,089 - -0.3
2,099,114 - -0.1
2,099,116 - +0.5
2,099,127 + +0.3
2,099,129 - +1.0
2,099,146 - +1.6
2,099,156 + -1.6
2,099,159 - +0.6
2,099,165 - +0.6
2,099,169 - +0.5
2,099,171 - +0.6
2,099,171 - -0.8
2,099,177 - +0.3
2,099,178 - +0.3
2,099,189 + +1.1
2,099,193 + -0.1
2,099,207 - +0.4
2,099,218 + -0.6
2,099,219 - +3.4
2,099,220 + -0.3
2,099,222 - +1.5
2,099,225 + +0.6
2,099,235 - +0.1
2,099,237 + +1.1
2,099,243 - +2.0
2,099,244 + +1.7
2,099,247 + +0.3
2,099,249 + +0.2
2,099,294 - +0.1
2,099,305 - +0.0
2,099,308 + -0.9
2,099,309 + +0.1
2,099,314 - -1.0
2,099,332 + +0.2
2,099,332 - +0.8
2,099,351 - -0.4
2,099,356 + +1.0
2,099,365 + +1.5
2,099,380 - -1.2
2,099,380 - -1.0
2,099,382 - -0.2
2,099,384 - +0.7
2,099,385 + +0.0
2,099,387 + +0.4
2,099,389 - -1.0
2,099,392 - -0.8
2,099,392 + +1.1
2,099,396 + +0.5
2,099,398 + +0.8
2,099,404 - -0.3
2,099,405 + -0.5
2,099,413 - +0.5
2,099,417 + +0.4
2,099,418 + -1.4
2,099,420 - -0.1
2,099,425 - -0.3
2,099,426 + +0.2
2,099,428 + -0.5
2,099,432 + -0.0
2,099,435 - +0.3
2,099,440 - -0.5
2,099,441 - +0.7
2,099,441 - -0.6
2,099,446 - +0.2
2,099,449 + +0.9
2,099,461 - -0.1
2,099,466 - +0.6
2,099,472 + +0.7
2,099,484 - -1.5
2,099,486 + -0.1
2,099,487 + +0.9
2,099,488 - -0.2
2,099,489 + -1.6
2,099,520 + +0.6
2,099,532 - +0.0
2,099,545 + -0.1
2,099,555 - +0.3
2,099,563 - +0.1
2,099,565 + -0.7
2,099,566 + -0.2
2,099,566 - -1.4
2,099,571 - +0.3
2,099,574 + +0.6
2,099,575 - -1.1
2,099,575 + -0.0
2,099,576 - +1.0
2,099,580 + +1.5
2,099,582 + -0.6
2,099,584 + -0.2
2,099,587 - -0.0
2,099,598 - +0.6
2,099,599 - +0.0
2,099,600 + +1.2
2,099,603 - +0.1
2,099,612 - -0.1
2,099,613 + +0.0
2,099,620 - +0.2
2,099,621 - -0.3
2,099,622 + -1.2
2,099,637 - -0.2
2,099,640 + +1.6
2,099,640 - +1.1
2,099,646 + +0.1
2,099,672 + -0.1
2,099,689 - -0.4
2,099,692 + -0.1
2,099,741 - +0.8
2,099,766 - -0.2
2,099,872 - -0.1
2,099,919 + +0.6
2,099,949 + 9247 mRNA_879 0.11 -1.3
2,100,029 - 9247 mRNA_879 0.15 -0.0
2,100,051 + 9247 mRNA_879 0.16 +0.2
2,100,053 + 9247 mRNA_879 0.17 +2.0
2,100,173 + 9247 mRNA_879 0.23 -0.0
2,100,219 - 9247 mRNA_879 0.26 -0.1
2,100,266 + 9247 mRNA_879 0.28 +0.2
2,100,320 - 9247 mRNA_879 0.31 +1.5
2,100,329 - 9247 mRNA_879 0.32 +0.9
2,100,472 - 9247 mRNA_879 0.39 -0.5
2,100,486 + 9247 mRNA_879 0.40 +0.3
2,100,511 + 9247 mRNA_879 0.41 -0.7
2,100,794 + 9247 mRNA_879 0.57 +0.8
2,101,110 - 9247 mRNA_879 0.74 +1.2
2,101,167 + 9247 mRNA_879 0.77 -0.9
2,101,226 + 9247 mRNA_879 0.80 -0.3
2,101,234 + 9247 mRNA_879 0.81 +0.3
2,101,351 + 9247 mRNA_879 0.87 -0.9
2,101,366 + 9247 mRNA_879 0.88 +0.8
2,101,502 - -0.3
2,101,798 - +0.6
2,101,902 - -0.7
2,101,914 + +0.4
2,101,938 - +0.0
2,101,938 - +0.4
2,101,938 - +0.6
2,101,964 + +0.5
2,102,073 - -1.1
2,102,079 - +0.7
2,102,085 + +0.2
2,102,228 + 9248 mRNA_880 0.15 -2.1

Or see this region's nucleotide sequence