Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_902

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9269 and 9270 are separated by 349 nucleotides9270 and 9271 are separated by 285 nucleotides mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2,149,228 to 2,151,284 9269 mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672 9270 mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725 9271

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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2,150,894 + 9269 mRNA_901 0.81 -0.3
2,151,015 - 9269 mRNA_901 0.87 -0.6
2,151,022 - 9269 mRNA_901 0.87 -0.6
2,151,040 - 9269 mRNA_901 0.88 -1.2
2,151,079 - +0.7
2,151,331 - -1.7
2,151,345 + -0.1
2,151,356 - -0.5
2,151,374 - -0.8
2,151,404 - +0.6
2,151,415 + +0.6
2,151,445 - -0.2
2,151,525 + +0.3
2,151,620 - -0.2
2,151,627 + -0.0
2,151,799 - -0.1
2,151,811 + -2.6
2,151,812 + -2.1
2,151,857 + -0.7
2,151,978 - +0.1
2,152,007 - +0.3
2,152,081 + 9270 mRNA_902 0.11 +0.7
2,152,395 - 9270 mRNA_902 0.19 -0.5
2,152,404 - 9270 mRNA_902 0.19 +2.0
2,152,715 + 9270 mRNA_902 0.27 +0.2
2,152,735 - 9270 mRNA_902 0.27 -0.4
2,153,718 - 9270 mRNA_902 0.52 +0.7
2,153,922 - 9270 mRNA_902 0.57 -0.6
2,155,485 + +0.2
2,155,681 - -0.4
2,155,769 - -1.7
2,155,914 + -0.1
2,156,047 - 9271 mRNA_903 0.12 +0.6
2,156,089 + 9271 mRNA_903 0.17 +1.0
2,156,117 + 9271 mRNA_903 0.21 -0.1
2,156,356 - 9271 mRNA_903 0.52 -0.0
2,156,375 + 9271 mRNA_903 0.54 +0.6

Or see this region's nucleotide sequence