Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
1 + +2.0
1 + +0.4
1 + -0.3
1 + +0.3
1 + -0.0
2 + +0.4
2 + +0.1
5 + +1.3
18 + +0.5
30 + -0.5
37 + +0.9
37 + -0.2
41 + +0.4
42 + -1.4
44 + +1.3
49 + +1.0
49 + -1.1
50 + +0.2
54 + +0.3
58 - -1.4
60 - -0.3
60 + -0.8
60 - +0.3
61 - -1.8
61 + -1.4
63 + -1.0
63 + +1.0
63 + -1.5
63 + +2.0
63 + +0.2
63 + -0.5
64 + +0.4
66 - -0.0
66 + -0.5
70 + -0.4
70 + +0.5
70 - +0.5
71 + +0.1
73 + -1.0
75 - +2.2
77 - -0.1
78 + -1.4
78 - -0.0
78 + -0.1
78 + +2.2
78 + +0.2
78 + -0.2
78 + +0.3
78 + +1.2
78 + -0.6
79 + -0.7
81 - -1.6
81 - +0.5
82 + -0.1
85 + -0.7
104 + -0.1
126 + -0.0
126 + +2.8
128 - -0.9
135 + +0.2
142 + +0.5
150 + -0.1
154 + +1.8
157 + -0.2
171 - -0.5
171 + -1.0
172 + +0.0
172 + +1.4
175 - +1.1
176 - -0.2
177 - +0.1
177 - +0.4
191 - -0.3
192 + -0.7
192 + -0.9
192 + +0.9
193 + +0.8
193 + +0.5
193 + -0.6
198 - -0.6
218 + -0.0
225 + -0.6
235 + -1.4
242 + -0.7
263 - -0.6
293 + -0.8
303 + +0.2
333 - -1.5
339 - -0.0
348 + +0.2
349 + -0.2
377 - +0.8
381 - -2.0
469 + -1.4
487 - 9298 mRNA_930 0.10 -0.3
722 + 9298 mRNA_930 0.29 -1.7
1,641 - +2.4
1,656 - -0.5
1,768 - -0.1
1,778 - +1.3
1,794 + -0.0

Or see this region's nucleotide sequence