Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1043

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9410 and 9411 are separated by 160 nucleotides mRNA_1042: 9410 - Hypothetical Protein, at 261,583 to 262,732 9410 mRNA_1043: 9411 - K16732 PRC1 protein regulator of cytokinesis 1, at 262,893 to 265,321 9411

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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261,911 + 9410 mRNA_1042 0.29 +1.2
261,932 + 9410 mRNA_1042 0.30 +0.9
261,932 - 9410 mRNA_1042 0.30 +0.7
262,106 - 9410 mRNA_1042 0.45 -1.2
262,110 + 9410 mRNA_1042 0.46 +0.0
262,255 - 9410 mRNA_1042 0.58 +0.1
262,414 - 9410 mRNA_1042 0.72 -0.6
262,419 - 9410 mRNA_1042 0.73 +0.3
262,421 + 9410 mRNA_1042 0.73 +0.3
262,427 - 9410 mRNA_1042 0.73 +0.4
262,582 - 9410 mRNA_1042 0.87 +0.4
262,588 + 9410 mRNA_1042 0.87 +0.4
262,624 - +0.2
262,720 + -0.2
262,733 + +0.1
262,851 + +0.5
262,854 - -1.2
263,005 - -1.3
263,027 + -1.6
263,273 - 9411 mRNA_1043 0.16 -0.8
263,411 - 9411 mRNA_1043 0.21 -0.0
263,579 - 9411 mRNA_1043 0.28 +1.1
263,750 - 9411 mRNA_1043 0.35 -0.3
263,752 - 9411 mRNA_1043 0.35 -0.8
263,781 + 9411 mRNA_1043 0.37 -0.3
263,878 - 9411 mRNA_1043 0.41 +0.1
264,025 + 9411 mRNA_1043 0.47 +1.0
264,037 - 9411 mRNA_1043 0.47 -0.8
264,040 - 9411 mRNA_1043 0.47 +0.3
264,149 + 9411 mRNA_1043 0.52 +0.3
264,220 - 9411 mRNA_1043 0.55 -0.1
264,223 + 9411 mRNA_1043 0.55 +0.2
264,609 + 9411 mRNA_1043 0.71 +0.6
264,611 + 9411 mRNA_1043 0.71 -0.0
264,615 + 9411 mRNA_1043 0.71 +0.6
264,891 - 9411 mRNA_1043 0.82 -0.4
264,996 - 9411 mRNA_1043 0.87 -1.5
265,204 - -1.0
265,331 - +0.6
265,474 - +1.8
265,496 + -0.3
265,622 + +0.3
265,641 - -0.2
265,724 - +1.2
265,824 + -1.7
266,093 + +0.6

Or see this region's nucleotide sequence