Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1084

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9452 and 9453 are separated by 516 nucleotides mRNA_1084: 9452 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 371,981 to 373,255 9452 mRNA_1085: 9453 - Hypothetical Protein, at 373,772 to 374,332 9453

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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371,219 - -0.5
371,228 + -2.0
371,244 + -0.0
371,354 + +0.1
371,459 - +0.4
371,460 + +3.3
371,462 - -0.8
371,466 - +1.7
371,468 + -2.3
372,109 - 9452 mRNA_1084 0.10 -0.0
372,136 - 9452 mRNA_1084 0.12 -1.4
372,217 - 9452 mRNA_1084 0.19 +0.3
372,643 - 9452 mRNA_1084 0.52 -0.4
372,668 + 9452 mRNA_1084 0.54 -0.4
372,674 - 9452 mRNA_1084 0.54 +1.5
372,675 + 9452 mRNA_1084 0.54 -1.4
372,792 + 9452 mRNA_1084 0.64 -0.1
372,811 + 9452 mRNA_1084 0.65 +1.6
372,812 - 9452 mRNA_1084 0.65 +1.9
372,854 - 9452 mRNA_1084 0.68 -1.0
373,119 - 9452 mRNA_1084 0.89 -0.4
373,140 + +1.7
373,551 + -1.4
373,591 - +0.5
373,591 - +0.3
373,597 + +0.8
373,597 - -0.1
373,746 - +1.8
373,790 - -0.9
373,888 - 9453 mRNA_1085 0.21 +2.0
373,919 + 9453 mRNA_1085 0.26 -1.0
373,937 - 9453 mRNA_1085 0.29 -1.6

Or see this region's nucleotide sequence