Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1085

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9452 and 9453 are separated by 516 nucleotides9453 and 9454 are separated by 53 nucleotides mRNA_1084: 9452 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 371,981 to 373,255 9452 mRNA_1085: 9453 - Hypothetical Protein, at 373,772 to 374,332 9453 mRNA_1086: 9454 - Hypothetical Protein, at 374,386 to 377,567 9454

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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372,792 + 9452 mRNA_1084 0.64 -0.1
372,811 + 9452 mRNA_1084 0.65 +1.6
372,812 - 9452 mRNA_1084 0.65 +1.9
372,854 - 9452 mRNA_1084 0.68 -1.0
373,119 - 9452 mRNA_1084 0.89 -0.4
373,140 + +1.7
373,551 + -1.4
373,591 - +0.5
373,591 - +0.3
373,597 + +0.8
373,597 - -0.1
373,746 - +1.8
373,790 - -0.9
373,888 - 9453 mRNA_1085 0.21 +2.0
373,919 + 9453 mRNA_1085 0.26 -1.0
373,937 - 9453 mRNA_1085 0.29 -1.6
374,882 + 9454 mRNA_1086 0.16 +0.8
374,903 + 9454 mRNA_1086 0.16 -0.1
375,227 + 9454 mRNA_1086 0.26 +0.2

Or see this region's nucleotide sequence