Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1103

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9470 and 9471 are separated by 581 nucleotides9471 and 9472 are separated by 986 nucleotides mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407,441 to 409,508 9470 mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410,090 to 412,457 9471 mRNA_1104: 9472 - K02540 MCM2 DNA replication licensing factor MCM2, at 413,444 to 416,551 9472

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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409,107 + 9470 mRNA_1102 0.81 +0.4
409,223 + 9470 mRNA_1102 0.86 +0.5
409,230 + 9470 mRNA_1102 0.87 +0.9
409,513 + +1.8
409,771 - +0.9
409,790 + -1.0
409,800 - +1.4
409,827 + +0.7
409,907 + -0.5
409,935 + -0.5
409,966 - +0.2
410,045 - +0.7
410,046 + -0.4
410,105 + +0.4
410,384 - 9471 mRNA_1103 0.12 +1.2
410,402 + 9471 mRNA_1103 0.13 +2.1
410,645 + 9471 mRNA_1103 0.23 -0.2
411,394 + 9471 mRNA_1103 0.55 +0.1
411,652 - 9471 mRNA_1103 0.66 +0.2
411,991 - 9471 mRNA_1103 0.80 +0.1
412,669 + -0.4
412,752 - -1.2
412,757 - +0.3
412,812 + +0.5
412,826 + +0.3
412,839 + +0.1
412,957 - +0.2
412,957 - +0.1
412,977 + -0.9
412,982 + -0.2
413,091 + +0.4
413,130 - -0.7
413,130 + +2.1
413,137 - -1.3
413,148 - +1.5
413,155 + -1.0
413,211 + +0.1
413,216 + -0.8
413,217 - +1.2
413,218 - -0.6
413,252 + +0.2
413,257 + -1.7
413,269 - +0.3
413,372 + +0.8

Or see this region's nucleotide sequence