Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1292

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9659 and 9660 are separated by 167 nucleotides9660 and 9661 are separated by 438 nucleotides mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845,100 to 846,215 9659 mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846,383 to 850,419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850,858 to 851,999 9661

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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845,448 + 9659 mRNA_1291 0.31 -1.0
845,880 - 9659 mRNA_1291 0.70 +0.6
846,183 + -0.3
846,636 + -2.5
846,942 - 9660 mRNA_1292 0.14 -1.4
847,205 - 9660 mRNA_1292 0.20 -0.6
847,222 + 9660 mRNA_1292 0.21 -1.3
847,772 + 9660 mRNA_1292 0.34 -0.5
847,877 + 9660 mRNA_1292 0.37 -1.3
848,237 + 9660 mRNA_1292 0.46 +0.9
848,511 + 9660 mRNA_1292 0.53 -0.9
848,525 - 9660 mRNA_1292 0.53 -0.7
848,672 - 9660 mRNA_1292 0.57 -0.6
849,014 + 9660 mRNA_1292 0.65 -1.6
849,450 - 9660 mRNA_1292 0.76 -1.0
849,688 - 9660 mRNA_1292 0.82 -2.0
849,740 + 9660 mRNA_1292 0.83 -1.9
849,896 - 9660 mRNA_1292 0.87 -2.8
850,122 - -3.6
850,141 - -4.4
850,148 + -0.9
850,290 - -1.7
850,299 + -1.0
850,307 + -0.6
850,325 - -2.0
850,344 + -0.7
850,420 + +0.2
850,487 + +0.5
850,546 - -0.3
850,602 - +0.3
850,740 - -0.1
850,743 - -0.2
850,744 - +0.3
850,884 + +0.8
850,936 + -2.4
851,035 + 9661 mRNA_1293 0.15 -0.0
851,206 - 9661 mRNA_1293 0.30 +0.7

Or see this region's nucleotide sequence