Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1325

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1325: 9693 - KOG1960 Predicted RNA-binding protein, contains KH domains, at 934,914 to 938,027 9693

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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933,927 + -0.6
933,938 - -0.0
933,942 - +0.0
933,984 + +0.3
933,990 - -0.2
934,003 - +0.3
934,284 + +1.0
934,292 - +0.3
934,322 + -0.5
934,378 - +0.1
934,416 - -0.1
934,417 + -1.5
934,701 + -0.0
934,734 + -0.3
934,811 - +0.1
935,144 - -0.6
935,150 + -1.4
935,270 + 9693 mRNA_1325 0.11 +0.5
935,275 - 9693 mRNA_1325 0.12 -1.0
935,279 - 9693 mRNA_1325 0.12 -1.4
935,390 - 9693 mRNA_1325 0.15 +1.0
935,433 - 9693 mRNA_1325 0.17 -3.0
936,305 + 9693 mRNA_1325 0.45 -0.7
936,365 + 9693 mRNA_1325 0.47 -1.2
936,430 - 9693 mRNA_1325 0.49 -1.4
936,605 - 9693 mRNA_1325 0.54 -0.6
936,730 - 9693 mRNA_1325 0.58 -2.7
936,732 + 9693 mRNA_1325 0.58 -2.4
937,097 + 9693 mRNA_1325 0.70 +0.6
937,386 + 9693 mRNA_1325 0.79 -0.3
937,393 + 9693 mRNA_1325 0.80 +0.1
937,498 - 9693 mRNA_1325 0.83 +0.1
937,540 - 9693 mRNA_1325 0.84 -0.1
937,569 - 9693 mRNA_1325 0.85 -0.7
937,635 + 9693 mRNA_1325 0.87 -0.1
937,728 + +0.2
937,741 + -1.9
937,754 - -1.6
937,760 - +0.6
937,763 - -0.6
937,803 + -0.5
937,806 - +0.2
937,832 - -0.7
937,838 - -0.6
937,885 + -0.0
937,898 - +0.0
937,954 - -0.0
938,042 - +1.1
938,046 - -1.1
938,050 - +0.5
938,054 + -0.6
938,058 + +0.1
938,061 - +0.3
938,066 - +0.5
938,073 - +0.3
938,094 - +0.7
938,113 - +0.5
938,116 + -0.3
938,134 + +2.0
938,134 + +0.4
938,136 - -1.0
938,141 - -2.4
938,172 - -0.2
938,177 - -2.5
938,179 - -0.7
938,183 - -1.3
938,186 - -1.2
938,190 - -1.0
938,190 - -0.1
938,190 - +0.6
938,190 - -0.2
938,190 - +0.7

Or see this region's nucleotide sequence