Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1355

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9722 and 9723 are separated by 995 nucleotides mRNA_1354: 9722 - Hypothetical Protein, at 69,556 to 71,202 9722 mRNA_1355: 9723 - SUPERFAMILY--SSF50685, at 72,198 to 73,021 9723

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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71,234 - -0.4
71,301 + -0.2
71,420 - -0.4
71,423 + -0.5
71,448 - -0.5
71,556 + +0.7
71,591 + +1.0
71,612 - +0.2
71,721 + -1.1
71,735 - +0.1
71,873 + +0.2
72,058 + +1.2
72,155 + -0.1
72,158 + -0.1
72,321 - 9723 mRNA_1355 0.15 +0.3
72,431 - 9723 mRNA_1355 0.28 -0.4
72,446 - 9723 mRNA_1355 0.30 -2.7
72,454 + 9723 mRNA_1355 0.31 +0.0
72,464 - 9723 mRNA_1355 0.32 +0.2
72,639 - 9723 mRNA_1355 0.54 +0.0
72,704 - 9723 mRNA_1355 0.61 -0.1
72,748 - 9723 mRNA_1355 0.67 +0.7
72,751 + 9723 mRNA_1355 0.67 +0.5
72,881 - 9723 mRNA_1355 0.83 -0.0
72,893 - 9723 mRNA_1355 0.84 +0.6
73,030 + +0.1
73,060 + -3.2
73,062 - -0.1
73,269 - -0.4
73,297 - +0.4
73,306 - -0.4
73,308 - +0.5
73,310 - +1.3
73,314 - +1.2
73,337 - +0.0
73,338 + +0.2
73,343 - +1.9
73,345 - +0.1
73,352 - -0.3
73,353 + -1.5
73,359 - -0.7
73,360 - +0.7
73,368 + -1.3
73,459 + +0.9
73,493 - +1.5
73,498 + +0.6
73,506 - +0.3
73,521 - +0.5
73,558 - -0.0
73,591 + -1.3
73,601 - +0.0
73,630 - +0.2
73,631 - +1.5
73,647 - -2.1
73,649 - -0.5
73,654 + -2.4
73,662 - +0.5
73,663 + +0.5
73,666 - -0.2
73,668 + -0.0
73,747 - -0.2
73,794 + +0.9
73,840 + +0.2
73,846 + -0.2
73,850 - +0.7
73,850 + +1.3
73,867 - +1.1
73,869 - -0.8
73,869 - -1.3
73,877 - +0.3
73,901 - -0.4
73,926 - -0.8
73,949 - +1.0
74,007 - -2.1

Or see this region's nucleotide sequence