Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1391

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9758 and 9759 are separated by 192 nucleotides9759 and 9760 are separated by 664 nucleotides mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156,559 to 159,898 9758 mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111 9759 mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161,776 to 163,110 9760

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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159,091 + 9758 mRNA_1390 0.76 -0.8
159,213 - 9758 mRNA_1390 0.79 +0.6
159,645 - -0.3
159,657 + +0.2
159,659 - -1.1
159,909 + -0.8
159,954 - +0.1
160,369 + 9759 mRNA_1391 0.27 -3.3
160,664 - 9759 mRNA_1391 0.56 -0.1
160,693 + 9759 mRNA_1391 0.59 +0.7
160,802 - 9759 mRNA_1391 0.70 +0.7
160,850 + 9759 mRNA_1391 0.74 +0.5
161,101 - -1.9
161,125 + +1.7
161,275 - -0.4
161,282 - -1.3
161,292 - +0.2
161,416 - -0.3
161,429 - +0.2
161,555 - +0.5

Or see this region's nucleotide sequence