Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1406

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1406: 9774 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 195,890 to 197,396 9774

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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195,108 + -0.0
195,111 - +0.5
195,246 - +1.3
195,263 - -0.6
195,408 + +0.7
195,437 - -0.8
195,446 + -0.7
195,447 + +1.6
195,448 - +0.1
195,454 + -0.5
195,458 - +0.9
195,470 + +0.6
195,471 + +0.3
195,476 + +0.4
195,487 - -0.8
195,487 - -0.8
195,489 - +0.3
195,491 - -0.1
195,497 + +0.1
195,507 + -0.0
195,510 - -0.6
195,512 + +1.1
195,522 - +1.0
195,529 - +0.6
195,535 + -0.7
195,539 + -0.7
195,543 + +1.2
195,551 + +0.6
195,554 - -0.4
195,554 - +0.0
195,554 - +0.3
195,555 + -1.5
195,571 + -0.8
195,575 + -0.1
195,584 + +0.3
195,591 - +1.0
195,591 - -1.0
195,623 + +0.7
195,636 - -2.1
195,636 - +0.5
195,742 - -0.3
195,760 + -0.3
195,796 - +0.7
195,884 - +2.2
196,009 - +1.3
196,201 - 9774 mRNA_1406 0.21 +0.7
196,212 + 9774 mRNA_1406 0.21 +0.2
196,219 - 9774 mRNA_1406 0.22 +0.2
196,368 + 9774 mRNA_1406 0.32 -1.5
196,382 - 9774 mRNA_1406 0.33 -0.3
196,499 + 9774 mRNA_1406 0.40 +0.1
196,602 + 9774 mRNA_1406 0.47 -0.3
196,649 - 9774 mRNA_1406 0.50 +0.3
196,768 - 9774 mRNA_1406 0.58 +0.7
197,073 + 9774 mRNA_1406 0.79 +0.5
197,228 + 9774 mRNA_1406 0.89 +0.7
197,349 - +0.6
197,497 - +1.2
197,509 - -0.3
198,111 - -1.3
198,275 + +0.0

Or see this region's nucleotide sequence