Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1412

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9779 and 9780 are separated by 506 nucleotides mRNA_1411: 9779 - Hypothetical Protein, at 205,641 to 206,403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206,910 to 211,871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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205,911 - 9779 mRNA_1411 0.35 +0.4
206,008 - 9779 mRNA_1411 0.48 +0.7
206,220 + 9779 mRNA_1411 0.76 +0.1
206,326 - 9779 mRNA_1411 0.90 -0.4
206,327 - -2.2
206,353 + +0.1
206,458 - -0.0
206,471 + -0.4
206,608 - +0.1
206,633 + -1.8
206,803 - +1.3
206,968 + -0.7
207,082 - -0.6
207,516 + 9780 mRNA_1412 0.12 +0.2
207,546 - 9780 mRNA_1412 0.13 -0.1
207,549 + 9780 mRNA_1412 0.13 +1.0
207,647 - 9780 mRNA_1412 0.15 +0.1
207,843 - 9780 mRNA_1412 0.19 -1.3
207,965 + 9780 mRNA_1412 0.21 +0.9
207,973 - 9780 mRNA_1412 0.21 -1.8
207,987 + 9780 mRNA_1412 0.22 -0.2
208,099 - 9780 mRNA_1412 0.24 -2.2
208,114 + 9780 mRNA_1412 0.24 -1.5
208,228 - 9780 mRNA_1412 0.27 -0.4
208,562 + 9780 mRNA_1412 0.33 -0.4
208,668 + 9780 mRNA_1412 0.35 +0.5
208,688 + 9780 mRNA_1412 0.36 +0.5
209,033 + 9780 mRNA_1412 0.43 -1.9
209,285 + 9780 mRNA_1412 0.48 +0.0
209,321 - 9780 mRNA_1412 0.49 -1.3
209,392 - 9780 mRNA_1412 0.50 +0.2
209,400 + 9780 mRNA_1412 0.50 +0.1
209,599 + 9780 mRNA_1412 0.54 +0.0
209,713 + 9780 mRNA_1412 0.56 -2.3
209,762 + 9780 mRNA_1412 0.57 +0.4
210,139 + 9780 mRNA_1412 0.65 +1.2
210,892 - 9780 mRNA_1412 0.80 -0.4
211,423 - -0.2
211,427 + +0.4
211,814 + -0.2
212,142 + +0.9
212,226 - +0.3
212,228 - +1.1
212,369 - +0.2
212,543 + +0.2
212,702 - +0.5
212,811 - +0.6

Or see this region's nucleotide sequence