Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1416

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224,768 to 225,675 9784

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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223,795 - -0.2
223,807 - -0.8
223,914 - +1.0
223,931 - +0.9
223,944 + -1.8
223,946 + +0.1
223,947 - -1.0
223,956 - +0.7
223,959 + +0.7
223,960 - -0.3
223,965 + -0.2
223,971 - +1.2
223,976 + -0.0
223,979 - -0.8
223,981 + +0.2
223,985 + +0.4
223,992 + -0.1
224,005 + -0.7
224,015 + -1.0
224,015 + -1.7
224,022 + +0.3
224,028 + -2.4
224,029 - +0.2
224,030 + +0.2
224,039 + -1.8
224,042 - -1.0
224,043 + +0.3
224,045 - -0.1
224,047 + +0.5
224,050 + +0.4
224,062 + +0.2
224,076 - -1.3
224,090 + -0.1
224,188 - +0.3
224,195 + -1.7
224,196 - +2.0
224,216 + +0.1
224,221 - -0.5
224,229 + +0.2
224,257 + +0.7
224,280 - +0.1
224,297 - -0.2
224,301 + +1.5
224,303 + -0.9
224,303 + +0.5
224,311 - -1.5
224,321 - -0.6
224,422 - -1.8
224,454 + +0.1
224,464 - -0.2
224,515 + +0.9
224,516 - -1.9
224,518 + -3.5
224,519 + +0.3
224,519 + +0.3
224,521 + -0.3
224,523 + -0.2
224,533 - -0.9
224,535 + -1.3
224,537 + +0.4
224,537 - -1.4
224,538 + +0.2
224,538 - +0.3
224,554 + -1.0
224,555 + -0.2
224,555 + -0.9
224,561 - +0.4
224,564 - -0.5
224,567 + +0.5
224,575 - -2.1
224,575 - +0.2
224,577 - +0.2
224,594 + -0.3
224,620 - +4.2
224,688 - +0.8
224,708 - +0.6
224,713 - -2.8
224,714 - -0.0
224,724 - +0.9
224,736 + +0.4
224,853 + -2.5
224,859 - 9784 mRNA_1416 0.10 +0.1
224,869 + 9784 mRNA_1416 0.11 -0.3
224,880 - 9784 mRNA_1416 0.12 -0.7
225,026 - 9784 mRNA_1416 0.28 +2.3
225,038 + 9784 mRNA_1416 0.30 -1.3
225,300 + 9784 mRNA_1416 0.59 +1.4
226,160 + +0.0
226,185 + -2.3
226,189 - +0.7
226,307 - -0.3

Or see this region's nucleotide sequence