Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1456

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9823 and 9824 are separated by 619 nucleotides9824 and 9825 are separated by 785 nucleotides mRNA_1455: 9823 - BLAST patatin-like phospholipase domain protein [Rhizoctoni..., at 331,786 to 334,001 9823 mRNA_1456: 9824 - Hypothetical Protein, at 334,621 to 335,519 9824 mRNA_1457: 9825 - K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, at 336,305 to 339,274 9825

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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333,728 + 9823 mRNA_1455 0.88 -0.3
333,756 - 9823 mRNA_1455 0.89 +0.7
333,756 - 9823 mRNA_1455 0.89 +1.7
333,767 + 9823 mRNA_1455 0.89 +0.0
333,852 - +1.8
333,882 - +0.4
333,902 + +0.7
333,914 + +1.3
334,030 + -2.0
334,042 - -1.6
334,047 - +0.4
334,051 - +0.0
334,072 + -0.1
334,334 - +0.6
334,494 + +0.4
334,567 + +0.3
334,803 + 9824 mRNA_1456 0.20 -0.2
335,081 + 9824 mRNA_1456 0.51 -0.2
335,105 - 9824 mRNA_1456 0.54 -0.9
335,522 + +0.3
335,672 - -1.1
335,776 + +0.1
335,805 - -0.1
335,830 - +0.3
335,965 - +0.5
336,096 + -0.2
336,098 + +0.6
336,155 - -0.1
336,158 + +0.3
336,217 - +0.2
336,261 - +1.5

Or see this region's nucleotide sequence