Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1469

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9837 and 9838 are separated by 707 nucleotides mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453 9838

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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365,481 + +0.2
365,482 - +0.2
365,482 + +0.1
365,483 + +0.1
365,485 - -0.5
365,496 - -0.1
365,505 + -2.1
365,506 - +0.1
365,506 + -0.4
365,506 - +1.1
365,536 - +0.2
365,625 - +1.6
365,642 - -0.0
365,653 + +0.1
365,660 - -0.2
365,669 - -0.6
365,687 - -1.2
366,677 - 9837 mRNA_1469 0.22 +0.4
367,617 - -0.5
367,619 + -1.8
367,687 + -0.2
367,721 + +1.5
367,721 - +0.2
367,852 - -0.9
367,867 - +0.3
368,014 + -2.5
368,037 + -1.1
368,131 - +0.9
368,146 - +0.2

Or see this region's nucleotide sequence