Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1479

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9846 and 9847 are separated by 476 nucleotides mRNA_1478: 9846 - Hypothetical Protein, at 399,796 to 400,850 9846 mRNA_1479: 9847 - ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 401,327 to 402,379 9847

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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401,066 - -0.8
401,075 + -0.3
401,213 - +1.7
401,220 + +0.8
401,474 - 9847 mRNA_1479 0.14 -0.5
401,597 + 9847 mRNA_1479 0.26 +1.4
402,063 + 9847 mRNA_1479 0.70 -0.2
402,152 - 9847 mRNA_1479 0.78 -0.5
402,269 - 9847 mRNA_1479 0.89 +0.4
402,325 + -0.2
402,358 + +0.3
402,479 - +1.4

Or see this region's nucleotide sequence