Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1483

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9850 and 9851 are separated by 278 nucleotides9851 and 9852 are separated by 349 nucleotides mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409,012 to 409,512 9850 mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409,791 to 410,399 9851 mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410,749 to 412,587 9852

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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408,933 - -2.6
409,093 + 9850 mRNA_1482 0.16 -1.2
409,229 + 9850 mRNA_1482 0.43 +0.7
409,381 + 9850 mRNA_1482 0.74 +0.2
409,431 - 9850 mRNA_1482 0.84 -0.4
409,456 + 9850 mRNA_1482 0.89 +0.1
409,496 - +0.6
409,527 - +0.1
409,582 + +0.4
409,737 + +0.5
409,783 + -1.3
410,170 - 9851 mRNA_1483 0.62 -1.3
410,649 + +1.4
410,889 + +0.3
411,020 + 9852 mRNA_1484 0.15 +1.3
411,097 + 9852 mRNA_1484 0.19 +0.5
411,170 - 9852 mRNA_1484 0.23 -0.6
411,382 + 9852 mRNA_1484 0.34 +0.4

Or see this region's nucleotide sequence