Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1503

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9870 and 9871 are separated by 359 nucleotides9871 and 9872 are separated by 164 nucleotides mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460,348 to 464,473 9870 mRNA_1503: 9871 - Hypothetical Protein, at 464,833 to 466,128 9871 mRNA_1504: 9872 - K11251 H2A histone H2A, at 466,293 to 467,391 9872

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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463,974 + 9870 mRNA_1502 0.88 -0.6
463,993 + 9870 mRNA_1502 0.88 +0.3
464,261 - -0.4
464,337 - -0.8
464,370 - +1.2
464,440 - -0.9
464,445 + -0.3
464,543 - +0.6
464,746 + -1.0
464,984 + 9871 mRNA_1503 0.12 +1.4
465,020 - 9871 mRNA_1503 0.14 -1.4
465,415 - 9871 mRNA_1503 0.45 -0.3
465,461 + 9871 mRNA_1503 0.48 -0.6
465,845 + 9871 mRNA_1503 0.78 +0.4
465,903 + 9871 mRNA_1503 0.83 +0.3
466,036 - +0.1
466,057 - -0.0
466,190 + -2.2
466,193 - -1.1
466,194 - +1.6
466,209 - -0.8
466,218 - -0.6
466,224 + -1.1
466,244 - -0.2
466,250 + -0.1
466,254 + -0.4

Or see this region's nucleotide sequence