Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1509

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9876 and 9877 are separated by 535 nucleotides9877 and 9878 are separated by 757 nucleotides mRNA_1508: 9876 - KOG3140 Predicted membrane protein, at 471,301 to 473,619 9876 mRNA_1509: 9877 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 474,155 to 475,425 9877 mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476,183 to 478,334 9878

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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473,517 + +2.2
473,518 - +1.2
473,518 + -1.1
473,520 + -0.0
473,523 - -1.0
473,545 - +1.4
473,564 + -1.2
473,696 - +0.4
473,801 - -1.8
473,810 + -2.8
473,824 - -0.3
473,829 - +0.0
473,835 + -0.9
473,846 + -1.5
473,848 + -0.7
473,856 - +0.0
473,858 - -1.0
473,862 + +2.1
473,867 + -0.2
473,997 + +0.3
473,998 - -0.0
473,999 + +1.1
474,004 - -1.0
474,017 + -0.1
474,033 + -0.3
474,131 + -0.4
474,181 + -0.1
474,269 - -0.2
474,305 - 9877 mRNA_1509 0.12 -0.5
474,320 + 9877 mRNA_1509 0.13 -0.3
474,574 + 9877 mRNA_1509 0.33 -0.1
474,594 + 9877 mRNA_1509 0.35 +1.1
474,740 + 9877 mRNA_1509 0.46 -0.2
475,479 + +0.3
475,910 + +0.1
475,916 + +0.3
476,024 - +0.9
476,078 - +0.2
476,086 + +0.2
476,179 + +0.4

Or see this region's nucleotide sequence