Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1639

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10006 and 10007 are separated by 495 nucleotides10007 and 10008 are separated by 716 nucleotides mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776,391 to 779,009 10006 mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779,505 to 783,057 10007 mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783,774 to 785,106 10008

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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778,802 - -1.7
778,809 - +1.2
778,979 - -1.3
779,139 - -1.1
779,139 - +0.3
779,147 + -1.7
779,149 + -0.6
779,153 - -0.0
779,408 + -0.3
779,428 + +0.6
783,062 - -1.4
783,068 - -0.9
783,069 - +0.9
783,070 - -1.0
783,072 + -1.5
783,082 - -1.5
783,083 + +0.4
783,086 - -0.7
783,090 - -0.2
783,097 - +0.2
783,098 + +0.2
783,098 + +0.9
783,102 - -2.1
783,105 + -1.0
783,107 + -0.6
783,113 + -0.7
783,137 + +0.5
783,243 - +0.1
783,245 + -2.9
783,250 + -2.1
783,265 + -0.9
783,266 + -1.8
783,275 + +0.5
783,282 + -1.7
783,415 + +0.4
783,430 + +3.0
783,712 + -2.1
783,850 - -0.0
784,018 - 10008 mRNA_1640 0.18 -2.2

Or see this region's nucleotide sequence